Structure of PDB 4v4q Chain DL

Receptor sequence

>4v4qDL (length=144) Species: 562 (Escherichia coli)

MRLNTLSPAEGSKKAGKRLGRGIGSGLGKTGGRGHKGQKSRSGGGVRRGF
EGGQMPLYRRLPKFGFTSRKAAITAEIRLSDLAKVEGGVVDLNTLKAANI
IGIQIEFAKVILAGEVTTPVTVRGLRVTKGARAAIEAAGGKIEE

3D structure

• PDB: 4v4q Structures of the bacterial ribosome at 3.5 A resolution.
• Chain: DL
• Resolution: 3.46 Å

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	DL	S12 K14 R21 I23 S25 G26 L27 K29 G31 G32 R33 G34 H35 K36 G37 Q38 K39 S40 R41 R47 R48 G49 E51 Q54 Y58 R59 R60 L61 P62 K63 F64 G65 F66 T67 S68 R69 K70 T74 E76 R78 N99 I100 K109 I111 L112 R126 T128 K129	S12 K14 R21 I23 S25 G26 L27 K29 G31 G32 R33 G34 H35 K36 G37 Q38 K39 S40 R41 R47 R48 G49 E51 Q54 Y58 R59 R60 L61 P62 K63 F64 G65 F66 T67 S68 R69 K70 T74 E76 R78 N99 I100 K109 I111 L112 R126 T128 K129

Gene Ontology

Molecular Function

• GO:0003735 structural constituent of ribosome
• GO:0005515 protein binding
• GO:0019843 rRNA binding

Biological Process

• GO:0002181 cytoplasmic translation
• GO:0006412 translation

Cellular Component

• GO:0005737 cytoplasm
• GO:0005840 ribosome
• GO:0015934 large ribosomal subunit
• GO:0022625 cytosolic large ribosomal subunit
• GO:1990904 ribonucleoprotein complex

External links

• PDB: RCSB:4v4q, PDBe:4v4q, PDBj:4v4q
• PDBsum: 4v4q
• PubMed: 16272117
• UniProt: P02413|RL15_ECOLI Large ribosomal subunit protein uL15 (Gene Name=rplO)