Structure of PDB 4v4q Chain DF

Receptor sequence

>4v4qDF (length=178) Species: 562 (Escherichia coli) [Search protein sequence]

AKLHDYYKDEVVKKLMTEFNYNSVMQVPRVEKITLNMGVGEAIADKKLLD
NAAADLAAISGQKPLITKARKSVAGFKIRQGYPIGCKVTLRGERMWEFFE
RLITIAVPRIRDFRGLSAKSFDGRGNYSMGVREQIIFPEIDYDKVDRVRG
LDITITTTAKSDEEGRALLAAFDFPFRK

3D structure

PDB

4v4q Structures of the bacterial ribosome at 3.5 A resolution.

Chain

Resolution

3.46 Å

3D
structure

[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]

Enzymatic activity

Enzyme Commision number

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	DF	S23 M25 Q26 R29 Q62 K63 K68 K87 V88 T89 R91	S23 M25 Q26 R29 Q62 K63 K68 K87 V88 T89 R91
BS02	rna	DF	T34 N36 M37 V39 T67 R70 G75 F76 S120 D122 R124 S128 M129 G130 R132 R149 G150 L151 D152 T154	T34 N36 M37 V39 T67 R70 G75 F76 S120 D122 R124 S128 M129 G130 R132 R149 G150 L151 D152 T154

Gene Ontology

	Molecular Function
GO:0000049	tRNA binding
GO:0003723	RNA binding
GO:0003735	structural constituent of ribosome
GO:0008097	5S rRNA binding
GO:0019843	rRNA binding

	Biological Process
GO:0000027	ribosomal large subunit assembly
GO:0002181	cytoplasmic translation
GO:0006412	translation

	Cellular Component
GO:0005737	cytoplasm
GO:0005829	cytosol
GO:0005840	ribosome
GO:0022625	cytosolic large ribosomal subunit
GO:1990904	ribonucleoprotein complex

View graph for
Molecular Function

View graph for
Biological Process

View graph for
Cellular Component

External links

PDB	RCSB:4v4q, PDBe:4v4q, PDBj:4v4q
PDBsum	4v4q
PubMed	16272117
UniProt	P62399\|RL5_ECOLI Large ribosomal subunit protein uL5 (Gene Name=rplE)

[Back to BioLiP]