Structure of PDB 4v9k Chain DE

Receptor sequence

>4v9kDE (length=205) Species: 262724 (Thermus thermophilus HB27)

MKGILGVKVGMTRIFRDDRAVPVTVILAGPCPVVQRRTPEKDGYTAVQLG
FLPQNPKRVNRPLKGHFAKAGVEPVRILREIRDFNPEGDTVTVEIFKPGE
RVDVTGTSKGRGFAGVMKRWNFAGGPDSHGAHKIHRHPGSIGNRKTPGRV
YKGKKMAGHYGAERVTVMNLEVVDVIPEENLLLVKGAVPGPNGGLVIVRE
TKKAA

3D structure

• PDB: 4v9k Crystal structures of EF-G-ribosome complexes trapped in intermediate states of translocation.
• Chain: DE
• Resolution: 3.5 Å

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	DE	K8 M11 T12 R13 P22 Q35 R37 Y44 Q48 K57 N60 R61 P62 H66 I77 L78 R79 E80 R82 K109 G110 R111 G112 F113 G115 K118 R119 F122 A123 D127 S128 H129 G130 A131 H132 K133 I134 R136 H137 G139 S140 I141 G142 N143 R144 K145 T146 P147 R149 V150 K152 G153 K154 M156 G158 H159 Y160 R164 T166 M168 N169 G186 V188 P189 P191 N192 K202 K203 A204	K8 M11 T12 R13 P22 Q35 R37 Y44 Q48 K57 N60 R61 P62 H66 I77 L78 R79 E80 R82 K109 G110 R111 G112 F113 G115 K118 R119 F122 A123 D127 S128 H129 G130 A131 H132 K133 I134 R136 H137 G139 S140 I141 G142 N143 R144 K145 T146 P147 R149 V150 K152 G153 K154 M156 G158 H159 Y160 R164 T166 M168 N169 G186 V188 P189 P191 N192 K202 K203 A204

Gene Ontology

Molecular Function

• GO:0003735 structural constituent of ribosome
• GO:0019843 rRNA binding

Biological Process

• GO:0006412 translation

Cellular Component

• GO:0005840 ribosome
• GO:0022625 cytosolic large ribosomal subunit
• GO:1990904 ribonucleoprotein complex

External links

• PDB: RCSB:4v9k, PDBe:4v9k, PDBj:4v9k
• PDBsum: 4v9k
• PubMed: 23812722
• UniProt: Q72I04|RL3_THET2 Large ribosomal subunit protein uL3 (Gene Name=rplC)