Structure of PDB 8aq8 Chain DDD

Receptor sequence

>8aq8DDD (length=339) Species: 40324 (Stenotrophomonas maltophilia)

HPPRIAVIGAGPAGLTAALILHRGGHRVSVYEGEASGTQGGTLDLHDDSG
QVALQRAGLLEAFRAVARHEGQEARMGDPWSGEITTGKPEIDRGDLRQLL
LDALPADTVQWGHSLTALVSGHGLRFANGVQREADIVIGADGAWSKVRAA
LSTCQPLPTGITFFEGWIAQPAADIAAMVGQGSLFCFGGEEALFVQRNSR
DRLCVYAALKRSSEWLDAQIAQHGIRTLVTGCYTGWATNLRRLLEACTDF
VRRPIYSLPADFCWTPRDGVTLIGDAAHLMPPVGVGVNLAMLDASDVAMA
LCARPDAISAMRDAEVLVRERARALMPDAIEGFQRWFIT

3D structure

• PDB: 8aq8 Tetracycline-modifying enzyme SmTetX from Stenotrophomonas maltophilia.
• Chain: DDD
• Resolution: 1.95 Å

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	FAD	DDD	I10 G11 G13 P14 A15 E34 G35 R107 S128 L129 D159 Y224 D293 P300 G304 V305	I8 G9 G11 P12 A13 E32 G33 R93 S114 L115 D141 Y206 D275 P282 G286 V287

Gene Ontology

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UnboundLocalError

Python 3.6.8: /usr/bin/python3 Wed Nov 27 05:02:48 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()

   1443                 pubmed=display_regular_ligand(pdbid,asym_id,lig3,ligIdx,title)

   1444         else:

=> 1445             pubmed,uniprot=display_protein_receptor(pdbid,asym_id,title)

   1446     

   1447     uniprot_line=''

pubmed = '', uniprot = '', display_protein_receptor = <function display_protein_receptor>, pdbid = '8aq8', asym_id = 'DDD', title = 'Tetracycline-modifying enzyme SmTetX from Stenotrophomonas maltophilia.'

 /var/www/html/BioLiP/pdb.cgi in display_protein_receptor(pdbid='8aq8', asym_id='DDD', title='Tetracycline-modifying enzyme SmTetX from Stenotrophomonas maltophilia.')

    839 

    840     if go:

=>  841         display_go(go,uniprot,pdbid,asym_id)

    842     return pubmed,uniprot

    843 

global display_go = <function display_go>, go = '0071949', uniprot = '', pdbid = '8aq8', asym_id = 'DDD'

 /var/www/html/BioLiP/pdb.cgi in display_go(go='0071949', uniprot='', pdbid='8aq8', asym_id='DDD')

    480         '''.replace("$namespace_link",namespace_link

    481           ).replace("$namespace",namespace

=>  482           ).replace("$uniprot",u

    483         ))

    484         for l,(term,name) in enumerate(go2aspect[Aspect]):

u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>