Structure of PDB 1vy5 Chain D6

Receptor sequence
>1vy5D6 (length=53) Species: 300852 (Thermus thermophilus HB8) [Search protein sequence]
ASEVRIKLLLECTECKRRNYATEKNKRNTPNKLELRKYCPWCRKHTVHRE
VKI
3D structure
PDB1vy5 A proton wire to couple aminoacyl-tRNA accommodation and peptide-bond formation on the ribosome.
ChainD6
Resolution2.55 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna D6 A2 S3 R6 R18 R19 Y21 A22 E24 K25 N26 N29 T30 L34 L36 R37 K38 Y39 W42 R44 H46 I54 A1 S2 R5 R17 R18 Y20 A21 E23 K24 N25 N28 T29 L33 L35 R36 K37 Y38 W41 R43 H45 I53
BS02 ZN D6 C13 C16 C40 C43 C12 C15 C39 C42
Gene Ontology
Molecular Function
GO:0000049 tRNA binding
GO:0003735 structural constituent of ribosome
GO:0019843 rRNA binding
Biological Process
GO:0006412 translation
Cellular Component
GO:0005737 cytoplasm
GO:0005840 ribosome
GO:1990904 ribonucleoprotein complex

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Molecular Function
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Cellular Component
External links
PDB RCSB:1vy5, PDBe:1vy5, PDBj:1vy5
PDBsum1vy5
PubMed25132179
UniProtP35871|RL33_THET8 Large ribosomal subunit protein bL33 (Gene Name=rpmG)

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