Structure of PDB 6gzz Chain D3

Receptor sequence

>6gzzD3 (length=208) Species: 300852 (Thermus thermophilus HB8) [Search protein sequence]

GRYIGPVCRLCRREGVKLYLKGERCYSPKCAMERRPYPPGQHGQKRARRP
SDYAVRLREKQKLRRIYGISERQFRNLFEEASKKKGVTGSVFLGLLESRL
DNVVYRLGFAVSRRQARQLVRHGHITVNGRRVDLPSYRVRPGDEIAVAEK
SRNLELIRQNLEAMKGRKVGPWLSLDVEGMKGKFLRLPDREDLALPVNEQ
LVIEFYSR

3D structure

PDB

6gzz Cryo-EM structure of the hibernating Thermus thermophilus 100S ribosome reveals a protein-mediated dimerization mechanism.

Chain

Resolution

4.13 Å

3D
structure

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Enzymatic activity

Enzyme Commision number

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	D3	G2 R3 I5 P7 R10 R13 K22 G23 E24 R25 K30 R35 R36 G41 Q42 H43 R49 Q62 S71 E72 Q74 K86 Q116 Q119 R122 H123 H125 R132 V133 D134 L135 K151 L155 S208 R209	G1 R2 I4 P6 R9 R12 K21 G22 E23 R24 K29 R34 R35 G40 Q41 H42 R48 Q61 S70 E71 Q73 K85 Q115 Q118 R121 H122 H124 R131 V132 D133 L134 K150 L154 S207 R208

Gene Ontology

	Molecular Function
GO:0003723	RNA binding
GO:0003735	structural constituent of ribosome
GO:0019843	rRNA binding
GO:0046872	metal ion binding

	Biological Process
GO:0006412	translation
GO:0042274	ribosomal small subunit biogenesis

	Cellular Component
GO:0005840	ribosome
GO:0015935	small ribosomal subunit
GO:1990904	ribonucleoprotein complex

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Molecular Function

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Biological Process

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Cellular Component

External links

PDB	RCSB:6gzz, PDBe:6gzz, PDBj:6gzz
PDBsum	6gzz
PubMed	30301898
UniProt	P80373\|RS4_THET8 Small ribosomal subunit protein uS4 (Gene Name=rpsD)

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