Structure of PDB 4v9b Chain D3

Receptor sequence
>4v9bD3 (length=77) Species: 300852 (Thermus thermophilus HB8) [Search protein sequence]
STRNGRDSQAKRLGVKRYEGQVVRAGNILVRQRGTRFKPGKNVGMGRDFT
LFALVDGVVEFQDRGRLGRYVHVRPLA
3D structure
PDB4v9b Structural basis for potent inhibitory activity of the antibiotic tigecycline during protein synthesis.
ChainD3
Resolution3.1 Å
3D
structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna D3 N12 R14 D15 S16 Q17 A18 K19 R20 K24 Y26 E27 Q29 A33 G34 N35 I36 R39 R41 T43 R44 G54 R55 D56 F57 F60 F69 R74 L75 R77 N4 R6 D7 S8 Q9 A10 K11 R12 K16 Y18 E19 Q21 A25 G26 N27 I28 R31 R33 T35 R36 G46 R47 D48 F49 F52 F61 R66 L67 R69
BS02 rna D3 R72 R74 R64 R66
Gene Ontology
Molecular Function
GO:0003735 structural constituent of ribosome
Biological Process
GO:0006412 translation
Cellular Component
GO:0005840 ribosome
GO:0022625 cytosolic large ribosomal subunit
GO:1990904 ribonucleoprotein complex

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:4v9b, PDBe:4v9b, PDBj:4v9b
PDBsum4v9b
PubMed23431179
UniProtP60493|RL27_THET8 Large ribosomal subunit protein bL27 (Gene Name=rpmA)

[Back to BioLiP]