Structure of PDB 4v97 Chain D3

Receptor sequence
>4v97D3 (length=59) Species: 300852 (Thermus thermophilus HB8) [Search protein sequence]
MPRLKVKLVKSPIGYPKDQKAALKALGLRRLQQERVLEDTPAIRGNVEKV
AHLVRVEVV
3D structure
PDB4v97 Reorganization of an intersubunit bridge induced by disparate 16S ribosomal ambiguity mutations mimics an EF-Tu-bound state.
ChainD3
Resolution3.516 Å
3D
structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna D3 K10 S11 I13 G14 P16 K17 K20 A21 A22 K24 A25 R29 R30 L31 Q32 P41 A42 G45 N46 K49 K10 S11 I13 G14 P16 K17 K20 A21 A22 K24 A25 R29 R30 L31 Q32 P41 A42 G45 N46 K49
BS02 rna D3 Q19 H52 Q19 H52
Gene Ontology
Molecular Function
GO:0003735 structural constituent of ribosome
Biological Process
GO:0006412 translation
Cellular Component
GO:0005840 ribosome
GO:0015934 large ribosomal subunit
GO:0022625 cytosolic large ribosomal subunit
GO:1990904 ribonucleoprotein complex

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:4v97, PDBe:4v97, PDBj:4v97
PDBsum4v97
PubMed23630274
UniProtQ5SHQ6|RL30_THET8 Large ribosomal subunit protein uL30 (Gene Name=rpmD)

[Back to BioLiP]