Structure of PDB 6zvk Chain D2

Receptor sequence

>6zvkD2 (length=50) Species: 9986 (Oryctolagus cuniculus)

SSHKTFRIKRFLAKKQKQNRPIPQWIRMKTGNKIRYNSKRRHWRRTKLGL

3D structure

• PDB: 6zvk The Halastavi arva Virus Intergenic Region IRES Promotes Translation by the Simplest Possible Initiation Mechanism.
• Chain: D2
• Resolution: 3.49 Å

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	D2	S2 S3 H4 K5 K10 L13 Q17 P22 I35 R36 Y37 N38 S39 K40 R41 R42 H43 W44 R45 R46 L49 L51	S1 S2 H3 K4 K9 L12 Q16 P21 I34 R35 Y36 N37 S38 K39 R40 R41 H42 W43 R44 R45 L48 L50
BS02	rna	D2	F7 R8 R11 K15 K18 Q19 P24 W26 I27 T31 I35 N38	F6 R7 R10 K14 K17 Q18 P23 W25 I26 T30 I34 N37

Gene Ontology

Molecular Function

• GO:0003735 structural constituent of ribosome

Biological Process

• GO:0006412 translation

Cellular Component

• GO:0005737 cytoplasm
• GO:0005840 ribosome
• GO:0022625 cytosolic large ribosomal subunit
• GO:1990904 ribonucleoprotein complex

External links

• PDB: RCSB:6zvk, PDBe:6zvk, PDBj:6zvk
• PDBsum: 6zvk
• PubMed: 33296660
• UniProt: G1SYU7|RL39_RABIT Large ribosomal subunit protein eL39 (Gene Name=RPL39)