Structure of PDB 5y6p Chain D2

Receptor sequence

>5y6pD2 (length=239) Species: 35689 (Griffithsia pacifica) [Search protein sequence]

VLRSPVPSGAATVYGYVGRGNISVILAKADEYMAKSVRKQYLAKSNPYGT
FGVQCTEGSVKFAADFSRIRALNAEFRAKLGSASKKTFDMYENRKNAISN
SHGCHHEETQFVGYKGVSSMYNVSKSEASGSCSRYASPETVVEAAMLRFM
DIQVKMAANPTGVYNISCNEGAARGQAEDVRVAALNAAFRQGQKSLGKLL
DEKYQQKKQGYSFAHGCNYEEGLINKYPALGAAFRSKSY

3D structure

PDB

5y6p Structure of phycobilisome from the red alga Griffithsia pacifica

Chain

Resolution

3.5 Å

3D
structure

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Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)
BS01	PEB	D2	L229 N230 F233	L185 N186 F189
BS02	PEB	D2	M190 F193 Y263	M146 F149 Y219
BS03	PEB	D2	G241 Y248	G197 Y204
BS04	PEB	D2	S128 T131 F132 Y135 K139	S84 T87 F88 Y91 K95
BS05	PEB	D2	L116 N117 F120	L72 N73 F76
BS06	PEB	D2	M77 S80 K83 H150	M33 S36 K39 H106
BS07	PEB	D2	M77 V81 Q84 Y85 C148 E151 Q154 Y165	M33 V37 Q40 Y41 C104 E107 Q110 Y121
BS08	PEB	D2	F193 M194 Q197 C261 E264	F149 M150 Q153 C217 E220
BS09	PVN	D2	S111 R114 A115 A118 E171 C176 S177 R178 Y179	S67 R70 A71 A74 E127 C132 S133 R134 Y135
BS10	PUB	D2	K199 Y208 C212 E214 R225 L229	K155 Y164 C168 E170 R181 L185
BS11	PUB	D2	F95 A108 D109 R112	F51 A64 D65 R68

External links

PDB	RCSB:5y6p, PDBe:5y6p, PDBj:5y6p
PDBsum	5y6p
PubMed	29045394

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