Structure of PDB 1vy5 Chain D2

Receptor sequence
>1vy5D2 (length=70) Species: 300852 (Thermus thermophilus HB8) [Search protein sequence]
MKLSEVRKQLEEARKLSPVELEKLVREKKRELMELRFQASIGQLSQNHKI
RDLKRQIARLLTVLNEKRRQ
3D structure
PDB1vy5 A proton wire to couple aminoacyl-tRNA accommodation and peptide-bond formation on the ribosome.
ChainD2
Resolution2.55 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna D2 K2 L3 R7 L10 R14 S45 Q46 N47 H48 I50 R51 K54 R55 A58 R59 L61 T62 N65 R69 K2 L3 R7 L10 R14 S45 Q46 N47 H48 I50 R51 K54 R55 A58 R59 L61 T62 N65 R69
Gene Ontology
Molecular Function
GO:0003735 structural constituent of ribosome
Biological Process
GO:0006412 translation
Cellular Component
GO:0005840 ribosome
GO:0022625 cytosolic large ribosomal subunit
GO:1990904 ribonucleoprotein complex

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:1vy5, PDBe:1vy5, PDBj:1vy5
PDBsum1vy5
PubMed25132179
UniProtQ5SHP6|RL29_THET8 Large ribosomal subunit protein uL29 (Gene Name=rpmC)

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