Structure of PDB 9fii Chain D

Receptor sequence
>9fiiD (length=418) Species: 224324 (Aquifex aeolicus VF5) [Search protein sequence]
MRSYPAIPRIYAETTLNMLLKRAKKPRVHSIDEYLKDGGYQALEKALNMS
PEEIIDWVDKSTLRGRGGAGFPTGKKWKFAVQNPGPRYFICNADESEPGT
FKDRIIIERDPHLLIEGIIISSYAIGANEAYIYIRGEYPAGYYILRDAIE
EAKKKGFLGKNILGSGFDLEIYVARGAGAYICGEETALIESLEGKRGHPR
LKPPYPVQKGLWGKPTVVNNVKTIANVPFIISMGWEEYRYIGPSDYAGPK
LFPVSGKVKKPGVYELPMNTTLREVIFKYAGGTLGNKKVKAVFSGALDCF
SSEELDIPMDYSPLGFGGTGTVIVLTEEDDIVEAALKIAEFYEHETCGQC
TPCRVGCYEQANLLEKIYKGEATEQDWEGFDFVNRNIQPTSICGLGAVAG
RLIRQTLEKFPEEWEKYR
3D structure
PDB9fii Structural robustness of the NADH binding site in NADH:ubiquinone oxidoreductase (complex I).
ChainD
Resolution2.5 Å
3D
structure
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Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 SF4 D P199 T346 C347 G348 Q349 C350 C353 I392 C393 G396 P199 T346 C347 G348 Q349 C350 C353 I392 C393 G396
BS02 FMN D G65 G67 K76 N92 E95 Y180 G183 E184 E185 N219 N220 T223 G65 G67 K76 N92 E95 Y180 G183 E184 E185 N219 N220 T223
Gene Ontology
Molecular Function
GO:0046872 metal ion binding
GO:0048038 quinone binding
GO:0051539 4 iron, 4 sulfur cluster binding
Biological Process
GO:1902600 proton transmembrane transport

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Molecular Function
View graph for
Biological Process
External links
PDB RCSB:9fii, PDBe:9fii, PDBj:9fii
PDBsum9fii
PubMed38960077
UniProtO66841|NUOF_AQUAE NADH-quinone oxidoreductase subunit F (Gene Name=nuoF)

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