Structure of PDB 9fh9 Chain D

Receptor sequence
>9fh9D (length=91) Species: 8355 (Xenopus laevis) [Search protein sequence]
KESYAIYVYKVLKQVHPDTGISSKAMSIMNSFVNDVFERIAGEASRLAHY
NKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSA
3D structure
PDB9fh9 Real-space refinement in PHENIX for cryo-EM and crystallography.
ChainD
Resolution2.5 Å
3D
structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 peptide D L103 H106 E110 L73 H76 E80
BS02 dna D Y39 S53 R83 S84 T85 Y9 S23 R53 S54 T55
BS03 dna D K31 E32 S33 I36 Y37 K1 E2 S3 I6 Y7
Gene Ontology
Molecular Function
GO:0003677 DNA binding
GO:0005515 protein binding
Cellular Component
GO:0000786 nucleosome
GO:0005634 nucleus
GO:0005694 chromosome

View graph for
Molecular Function
View graph for
Cellular Component
External links
PDB RCSB:9fh9, PDBe:9fh9, PDBj:9fh9
PDBsum9fh9
PubMed39143240
UniProtP02281|H2B11_XENLA Histone H2B 1.1

[Back to BioLiP]