Structure of PDB 9fdv Chain D

Receptor sequence
>9fdvD (length=418) Species: 224324 (Aquifex aeolicus VF5) [Search protein sequence]
SYPAIPRIYAETTLNMLLKRAKKPRVHSIDEYLKDGGYQALEKALNMSPE
EIIDWVDKSTLRGGGGAGFPTGKKWKFAVQNPGPRYFICNADESEPGTFK
DRIIIERDPHLLIEGIIISSYAIGANEAYIYIRGEYPAGYYILRDAIEEA
KKKGFLGKNILGSGFDLEIYVARGAGAYICGEETALIESLEGKRGHPRLK
PPYPVQKGLWGKPTVVNNVETIANVPFIISMGWEEYRYIGPSDYAGPKLF
PVSGKVKKPGVYELPMNTTLREVIFKYAGGTLGNKKVKAVFSGALDCFSS
EELDIPMDYSPLGFGGTGTVIVLTEEDDIVEAALKIAEFYEHETCGQCTP
CRVGCYEQANLLEKIYKGEATEQDWEGFDFVNRNIQPTSICGLGAVAGRL
IRQTLEKFPEEWEKYRKK
3D structure
PDB9fdv Structural robustness of the NADH binding site in NADH:ubiquinone oxidoreductase (complex I).
ChainD
Resolution1.986 Å
3D
structure
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Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 SF4 D P199 T346 C347 G348 Q349 C350 C353 I392 C393 L395 G396 P197 T344 C345 G346 Q347 C348 C351 I390 C391 L393 G394
BS02 FNR D G65 G67 K76 N92 E95 Y180 G183 E184 E185 V218 N219 N220 T223 G63 G65 K74 N90 E93 Y178 G181 E182 E183 V216 N217 N218 T221
Gene Ontology
Molecular Function
GO:0046872 metal ion binding
GO:0048038 quinone binding
GO:0051539 4 iron, 4 sulfur cluster binding
Biological Process
GO:1902600 proton transmembrane transport

View graph for
Molecular Function
View graph for
Biological Process
External links
PDB RCSB:9fdv, PDBe:9fdv, PDBj:9fdv
PDBsum9fdv
PubMed38960077
UniProtO66841|NUOF_AQUAE NADH-quinone oxidoreductase subunit F (Gene Name=nuoF)

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