Structure of PDB 9cg7 Chain D

Receptor sequence

>9cg7D (length=205) Species: 562 (Escherichia coli) [Search protein sequence]

ARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGARKPRLSDY
GVQLREKQKVRRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNV
VYRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKK
QSRVKAALELAEQREKPTWLEVDAGKMEGTFKRKPERSDLSADINEHLIV
ELYSK

3D structure

PDB

9cg7 Structural analysis of noncanonical translation initiation complexes.

Chain

Resolution

2.75 Å

3D
structure

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Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	D	A2 R3 P7 K8 L9 K10 R13 R14 K22 S23 R26 K31 C32 K33 Q36 P38 G39 Q40 H41 Y51 L55 R56 Q59 R62 R63 L68 E69 R70 Q71 N74 R81 T110 A112 E113 R115 Q116 S119 H120 K121 N131 I132 S134 Y135 R146 Q152 R154 E202 S205 K206	A1 R2 P6 K7 L8 K9 R12 R13 K21 S22 R25 K30 C31 K32 Q35 P37 G38 Q39 H40 Y50 L54 R55 Q58 R61 R62 L67 E68 R69 Q70 N73 R80 T109 A111 E112 R114 Q115 S118 H119 K120 N130 I131 S133 Y134 R145 Q151 R153 E201 S204 K205

External links

PDB	RCSB:9cg7, PDBe:9cg7, PDBj:9cg7
PDBsum	9cg7
PubMed	39222680
UniProt	P0A7V8\|RS4_ECOLI Small ribosomal subunit protein uS4 (Gene Name=rpsD)

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