Structure of PDB 9bf5 Chain D

Receptor sequence
>9bf5D (length=1190) Species: 666 (Vibrio cholerae) [Search protein sequence]
MNVSIEEFTHFDFQLVPEPSPLDLVITEPLKNHIEVNGVKSGALLPLPFQ
TGIGKTYTALNFLLQQMLEQVRSELKEENTGKKSKRLLYYVTDSVDNVVS
AKADLLKLIEKQTVKGEPRFTLEQQEYLKAQIVHLPNQSEQLLQCSDAVL
NDVLIGFNLNAERDVQAEWSAISGLRRHASNPEVKISLNRQAGYFYRNLI
DRLQKKQKGADRVLLSGSLLASVETLLPGEKIRNGSAHVAFLTTSKFLKG
FHNTRSRYSPLRDLSGAVLIIDEIDKQNQVILSELCKQQAQDLIWAIRTL
RANFRDHQLESSPRYDKIEDLFEPLRERLEEFGTNWNLAFAFNTEGANLN
ERPVRLFSDRSFTHVSSATHKLSLKSDFLRRKNLIFSDEKVEGSLIEKHG
LLTRFVNEADVIYQWFLGTMRKAVFQYWENVRGLEIEVRENRSLEGTFQE
AVQSLLTHFNLQEFESAVYESFDTRGLRQSAGGKANKLSSSKSYHHTGLK
LVEVAHNQGTRDTVNCKASFLNTSPSGVLADMVDAGAVILGISATARADT
VIHNFDFKYLNERLGNKLLSLSREQKQRVNNYYHSRRNYKDNGVVLTVKY
LNSRDAFLDALLEEYKPEARSSHFILNHYLGIAESEQAFVRSWLSKLLAS
IKAFISSPDNRYMLSLLNRTLDTTRQNINDFIQFCCDKWAKEFNVKTKTF
FGVNADWMRLVGYDEISKHLNTELGKVVVFSTYASMGAGKNPDYAVNLAL
EGESLISVADVTYSTQLRSDIDSIYLEKPTQLLLSDDYSHTANQLCQFHQ
ILSLQENGELSPKSAENWCRQQLMGMSRERSLQQYHQTSDYQSAVRKYIE
QAVGRAGRTSLKRKQILLFVDSGLKEILAEESRDPSLFSHEYVALVNKAK
SAGKSIVEDRAVRRLFNLAQRNNKDGMLSIKALVHRLHNQPASKSDIQEW
QDIRTQLLRYPTVAFQPERFNRLYLQSMTKGYYRYQGNLDGDPNSFEFFD
RVPYGDMVSEEDCSLATLVQNQYVRPWFERKGFACSWQKEANVMTPIMFT
NIYKGALGEQAVEAVLTAFDFTFEEVPNSIYERFDNRVIFAGIEQPIWLD
SKYWKHEGNESSEGYSSKIALVEEEFGPSKFIYVNALGDTSKPIRYLNSC
FVETSPQLAKVIEIPALIDDSNADTNRTAVQELIKWLHHS
3D structure
PDB9bf5 DdmDE eliminates plasmid invasion by DNA-guided DNA targeting.
ChainD
Resolution3.07 Å
3D
structure
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Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 dna D Y194 K246 F639 R669 T780 Q781 R828 E829 R830 Q833 Y194 K246 F639 R669 T780 Q781 R828 E829 R830 Q833
External links