Structure of PDB 8yud Chain D

Receptor sequence
>8yudD (length=386) Species: 33903 (Streptomyces avermitilis) [Search protein sequence]
NYQPTPEDRFTFGLWTVGWQGRDPFGDATRRALDPVETVQRLAGLGAHGV
TFHDDDLIPFGSSDTERESHIKRFRQALDATGMAVPMATTNLFTHPVFKD
GAFTANDRDVRRYALRKTIRNIDLAAELGAKTYVAWGGREGAESGAAKDV
RVALDRMKEAFDLLGEYVTAQGYDLRFAIEPKPNEPRGDILLPTVGHALA
FIERLERPELYGVNPEVGHEQMAGLNFPHGIAQALWAGKLFHIDLNGQSG
IKYDQDLRFGAGDLRAAFWLVDLLESAGYEGPKHFDFKPPRTEDLDGVWA
SAAGCMRNYLILKERTAAFRADPEVQEALRAARLDELAQPTAGDGLTALL
ADRTAFEDFDVEAAAARGMAFEQLDQLAMDHLLGAR
3D structure
PDB8yud Crystal structure of Xylose isomerase from Streptomyces avermitilis
ChainD
Resolution2.81 Å
3D
structure
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Enzymatic activity
Enzyme Commision number 5.3.1.5: xylose isomerase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 MG D E181 E217 D245 D287 E180 E216 D244 D286
BS02 MG D E217 H220 D255 D257 E216 H219 D254 D256
Gene Ontology
Molecular Function
GO:0000287 magnesium ion binding
GO:0009045 xylose isomerase activity
GO:0016853 isomerase activity
GO:0046872 metal ion binding
Biological Process
GO:0005975 carbohydrate metabolic process
GO:0042732 D-xylose metabolic process
Cellular Component
GO:0005737 cytoplasm

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:8yud, PDBe:8yud, PDBj:8yud
PDBsum8yud
PubMed
UniProtQ93HF3|XYLA_STRAW Xylose isomerase (Gene Name=xylA)

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