Structure of PDB 8yon Chain D

Receptor sequence
>8yonD (length=605) Species: 10666 (Enterobacteria phage T6) [Search protein sequence]
MIKNEIKILSDIEHIKKRSGMYIGSSANEMHERFLFGKWESVQYVPGLVK
LIDEIIDNSVDEGIRTKFKFANKINVTIKNNQVTVEDNGRGIPQAMVKTP
TGEEIPGPVAAWTIPKAGGNFGDDKERVTGGMNGVGSSLTNIFSVMFVGE
TGDGQNNIVVRCSNGMENKSWETIPGKWKGTRVTFIPDFMSFETNELSQV
YLDITLDRLQTLAVVYPDIQFTFNGKKVQGNFKKYARQYDEHAIVQEQEN
CSIAVGRSPDGFRQLTYVNNIHTKNGGHHIDCVMDDICEDLIPQIKRKFK
IDVTKARVKECLTIVMFVRDMKNMRFDSQTKERLTSPFGEIRSHIQLDAK
KISRAILNNEAILMPIIEAALARKLAAEKAAETKAAKKASKAKVHKHIKA
NLCGKDADTTLFLTEGDSAIGYLIDVRDKELHGGYPLRGKVLNSWGMSYA
DMLKNKELFDICAITGLVLGEKAENLNYHNIAIMTDADHDGLGSIYPSLL
GFFSNWPELFEQGRIRFVKTPVIIAHVGKKQEWFYTVAEYESAKDALPKH
SIRYIKGLGSLEKSEYREMIQNPVYDVVKLPENWKELFEMLMGDNADLRK
EWMSQ
3D structure
PDB8yon structure of phage T6 full-length topoisomerase II bound with DNA
ChainD
Resolution6.73 Å
3D
structure
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Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 dna D V441 L442 N443 A596 R599 V441 L442 N443 A596 R599
BS02 dna D D417 R438 K440 H489 D490 D417 R438 K440 H489 D490
BS03 ANP D E54 N58 R65 W112 N120 G131 M132 N133 G134 G136 S137 Q329 K331 E54 N58 R65 W112 N120 G131 M132 N133 G134 G136 S137 Q329 K331
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