Structure of PDB 8wy5 Chain D

Receptor sequence
>8wy5D (length=445) Species: 1053225 (Bacillus cereus VD045) [Search protein sequence]
MKFSNITIKNFRNFEKVNINLDNKNVIFGMNDIGKTNFLYALRFLLDKEI
RKFGFNKSDYHKHDTSKKIEIILTLDLSNYEKDEDTKKLISVVKGARTSA
NADVFYIALESKYDDKELYGNIILKWGSELDNLIDIPGRGNINALDNVFK
VIYINPKIVIYLIEEPEISLHRSMQIALSKQLFEQSTYKYFFLSTHSPEL
LYEMDNTRLIRVHSTEKVVCSSHMYNVVKKKLNKALSSALFAERVLLIEG
PSEKILFEKVLDEVEPEYELNGGFLLEVGGTYFNHYVCTLNDLGITHIIK
TDNDLKSKKGKKGVYELLGLNRCLNLLGRENLDEITIDIPEDIKGKKKKE
RLNERKKEIFKQYKNEVGEFLGERIYLSEIDLENDLYSAIGESMKRIFEN
EDPVHYLQKSKLFNMVELVNNLSTKDCFDVFEHEKFACLKELVGS
3D structure
PDB8wy5 nucleotide-sensing endonuclease with dsDNA
ChainD
Resolution3.12 Å
3D
structure
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Enzymatic activity
Enzyme Commision number 3.1.-.-
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 dna D Y412 H415 K438 K439 G440 K476 K539 Y282 H285 K308 K309 G310 K346 K409
BS02 dna D P381 S382 G409 D434 K436 S437 K439 K541 L542 P251 S252 G279 D304 K306 S307 K309 K411 L412
BS03 CA D E379 D432 E249 D302
Gene Ontology
Molecular Function
GO:0004519 endonuclease activity
GO:0046872 metal ion binding
Biological Process
GO:0051607 defense response to virus

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Molecular Function
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Biological Process
External links
PDB RCSB:8wy5, PDBe:8wy5, PDBj:8wy5
PDBsum8wy5
PubMed38471529
UniProtJ8H9C1|GAJA_BACC6 Endonuclease GajA (Gene Name=gajA)

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