Structure of PDB 8wt8 Chain D

Receptor sequence

>8wt8D (length=317) Species: 562 (Escherichia coli) [Search protein sequence]

LHYIGIDTAKEKLDVDVLRPDGRHRTKKFANTTKGHDELVSWLKGHKIDH
AHICIEATGTYMEPVAECLYDAGYIVSVINPALGKAFAQSEGLRNKTDTV
DARMLAEFCRQKRPAAWEAPHPLERALRALVVRHQALTDMHTQELNRTET
AREVQRPSIDAHLLWLEAELKRLEKQIKDLTDDDPDMKHRRKLLESIPGI
GEKTSAVLLAYIGLKDRFAHARQFAAFAGLTPRRYESGSSVRGASRMSKA
GHVSLRRALYMPAMVATSKTEWGRAFRDRLAANGKKGKVILGAMMRKLAQ
VAYGVLKSGVPFDASRH

3D structure

PDB

8wt8 Structural mechanism of bridge RNA-guided recombination.

Chain

Resolution

2.9 Å

3D
structure

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Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)
BS01	rna	D	A61 G63 N84 Q147 N150 R151 T154 R221 F222 H224 R226 Q227 F231 T235 P236 R238 S249 M251 K253 A254 G255 H256 V257 R260 R261 Y264 R283 K289 K290 K292 V293 G296 A297 R300 K301 G308 V309 F316 D317 R320 H321	A57 G59 N80 Q143 N146 R147 T150 R217 F218 H220 R222 Q223 F227 T231 P232 R234 S245 M247 K249 A250 G251 H252 V253 R256 R257 Y260 R279 K285 K286 K288 V289 G292 A293 R296 K297 G304 V305 F312 D313 R316 H317
BS02	dna	D	E153 P202 G203 G205 K207 T208 M265 V269 K273	E149 P198 G199 G201 K203 T204 M261 V265 K269
BS03	dna	D	R246 A248	R242 A244
BS04	dna	D	S241 S244	S237 S240
BS05	dna	D	K14 N84 P85 R250 Y264 M268 S272 K273 G291 L295	K10 N80 P81 R246 Y260 M264 S268 K269 G287 L291

External links

PDB	RCSB:8wt8, PDBe:8wt8, PDBj:8wt8
PDBsum	8wt8
PubMed	38926616
UniProt	A0A2X3M8B0

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