Structure of PDB 8wqd Chain D

Receptor sequence
>8wqdD (length=627) Species: 9606 (Homo sapiens) [Search protein sequence]
MEGLAGYVYKAASEGKVLTLAALLLNRSESDIRYLLGYVSQQGGQRSTPL
IIAARNGHAKVVRLLLEHYRVQTQQTGTVRFDGYVIDGATALWCAAGAGH
FEVVKLLVSHGANVNHTTVTNSTPLRAACFDGRLDIVKYLVENNANISIA
NKYDNTCLMIAAYKGHTDVVRYLLEQRADPNAKAHCGATALHFAAEAGHI
DIVKELIKWRAAIVVNGHGMTPLKVAAESCKADVVELLLSHADCDRRSRI
EALELLGASFANDRENYDIIKTYHYLYLAMLERFQDGDNILEKEVLPPIH
AYGNRTECRNPQELESIRQDRDALHMEGLIVRERILGADNIDVSHPIIYR
GAVYADNMEFEQCIKLWLHALHLRQKGNRNTHKDLLRFAQVFSQMIHLNE
TVKAPDIECVLRCSVLEIEQSMNRVKNISDADVHNAMDNYECNLYTFLYL
VCISTKTQCSEEDQCKINKQIYNLIHLDPRTREGFTLLHLAVNSNTPVDD
FHTNDVCSFPNALVTKLLLDCGAEVNAVDNEGNSALHIIVQYNRPISDFL
TLHSIIISLVEAGAHTDMTNKQNKTPLDKSTTGVSEILLKTQMKMSLKCL
AARAVRANDINYQDQIPRTLEEFVGFH
3D structure
PDB8wqd Local refinement of FEM1B bound with the C-degron of CCC89
ChainD
Resolution3.55 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 peptide D G83 Y84 W93 S122 R126 A127 Y153 N155 Y163 H185 R264 D356 Q394 F501 G83 Y84 W93 S122 R126 A127 Y153 N155 Y163 H185 R264 D356 Q394 F501
Gene Ontology
Molecular Function
GO:0005123 death receptor binding
GO:0005515 protein binding
GO:0046872 metal ion binding
GO:1990756 ubiquitin-like ligase-substrate adaptor activity
Biological Process
GO:0002070 epithelial cell maturation
GO:0006915 apoptotic process
GO:0016567 protein ubiquitination
GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0051438 regulation of ubiquitin-protein transferase activity
GO:0060442 branching involved in prostate gland morphogenesis
GO:0060743 epithelial cell maturation involved in prostate gland development
GO:0140627 ubiquitin-dependent protein catabolic process via the C-end degron rule pathway
GO:1902041 regulation of extrinsic apoptotic signaling pathway via death domain receptors
GO:2000001 regulation of DNA damage checkpoint
Cellular Component
GO:0005634 nucleus
GO:0005654 nucleoplasm
GO:0005737 cytoplasm
GO:0005739 mitochondrion
GO:0005829 cytosol
GO:0031462 Cul2-RING ubiquitin ligase complex

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:8wqd, PDBe:8wqd, PDBj:8wqd
PDBsum8wqd
PubMed38670995
UniProtQ9UK73|FEM1B_HUMAN Protein fem-1 homolog B (Gene Name=FEM1B)

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