Structure of PDB 8whb Chain D

Receptor sequence
>8whbD (length=89) Species: 3702 (Arabidopsis thaliana) [Search protein sequence]
TYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLASESSKLARYNK
KPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
3D structure
PDB8whb Molecular basis of chromatin remodelling by DDM1 involved in plant DNA methylation.
ChainD
Resolution3.17 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 dna D I64 Y65 I4 Y5
BS02 dna D I79 S80 P112 I19 S20 P52
Gene Ontology
Molecular Function
GO:0003677 DNA binding
GO:0030527 structural constituent of chromatin
GO:0046982 protein heterodimerization activity
Cellular Component
GO:0000786 nucleosome
GO:0005634 nucleus
GO:0005694 chromosome
GO:0005730 nucleolus
GO:0005829 cytosol
GO:0009534 chloroplast thylakoid
GO:0009570 chloroplast stroma

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Molecular Function
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Cellular Component
External links
PDB RCSB:8whb, PDBe:8whb, PDBj:8whb
PDBsum8whb
PubMed38413824
UniProtO23629|H2B6_ARATH Histone H2B.6 (Gene Name=H2B)

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