Structure of PDB 8vfx Chain D

Receptor sequence
>8vfxD (length=95) Species: 9606 (Homo sapiens) [Search protein sequence]
KRSRKESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASR
LAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSA
3D structure
PDB8vfx Cryo-EM structure of 186bp ALBN1 nucleosome aided by scFv
ChainD
Resolution2.65 Å
3D
structure
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Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 dna D R33 K34 S36 I39 Y40 R4 K5 S7 I10 Y11
BS02 dna D R31 S32 Y42 S55 S56 R86 S87 T88 R2 S3 Y13 S26 S27 R57 S58 T59
External links
PDB RCSB:8vfx, PDBe:8vfx, PDBj:8vfx
PDBsum8vfx
PubMed39121853
UniProtP06899|H2B1J_HUMAN Histone H2B type 1-J (Gene Name=H2BC11)

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