Structure of PDB 8ugq Chain D

Receptor sequence
>8ugqD (length=214) Species: 10823 (Maize streak virus - [Nigeria]) [Search protein sequence]
RAGSKADRPSLQIQTLQHAGTTMITVPSGGVCDLINTYARGSDEGNRHTS
ETLTYKIAIDYHFVADAAACRYSNTGTGVMWLVYDTTPGGQAPTPQTIFA
YPDTLKAWPATWKVSRELCHRFVVKRRWLFNMETDGRIGSDIPPSNASWK
PCKRNIYFHKFTSGLGVRTQWKNVTDGGVGAIQRGALYMVIAPGNGLTFT
AHGQTRLYFKSVGN
3D structure
PDB8ugq The two states of Maize Streak Virus (MSV) Geminivirus Architecture
ChainD
Resolution3.17 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 dna D K34 K142 R145 V153 K5 K113 R116 V124
BS02 dna D S39 K85 F190 R235 Y237 S10 K56 F161 R206 Y208
Gene Ontology
Molecular Function
GO:0003677 DNA binding
GO:0005198 structural molecule activity
Biological Process
GO:0046718 symbiont entry into host cell
GO:0075732 viral penetration into host nucleus
Cellular Component
GO:0019028 viral capsid
GO:0039615 T=1 icosahedral viral capsid
GO:0042025 host cell nucleus
GO:0043657 host cell

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:8ugq, PDBe:8ugq, PDBj:8ugq
PDBsum8ugq
PubMed
UniProtP06448|CAPSD_MSVN Capsid protein (Gene Name=V1)

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