Structure of PDB 8soq Chain D

Receptor sequence
>8soqD (length=205) Species: 220668 (Lactiplantibacillus plantarum WCFS1) [Search protein sequence]
FANVDGFPEVIYGAGKTATQIVGIVQALSQQTPILTTRLSAEKFAALQAL
TAVYHATAQCMTVGQPAPKTPGYIAVVTAGTADQPVAEEAAVTAETFGNR
VERVYDVGVAGIHRLFAKLDVIRGARVVIVIAGMEGALASVVGGLVDKPV
IAVPTSVGYGTSFQGMTALLTMLNSCASGITVVNIDNGFGAAYSASMVNQ
MASWS
3D structure
PDB8soq Structure of the LarB-Substrate Complex and Identification of a Reaction Intermediate during Nickel-Pincer Nucleotide Cofactor Biosynthesis.
ChainD
Resolution3.1 Å
3D
structure
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Enzymatic activity
Enzyme Commision number 2.5.1.143: pyridinium-3,5-biscarboxylic acid mononucleotide synthase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 DND D A124 G125 T126 D128 V154 A177 G178 M179 E180 A182 L183 A79 G80 T81 D83 V109 A132 G133 M134 E135 A137 L138
Gene Ontology
Molecular Function
GO:0016740 transferase activity
GO:0016787 hydrolase activity
Biological Process
GO:0006189 'de novo' IMP biosynthetic process
Cellular Component
GO:0005886 plasma membrane

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:8soq, PDBe:8soq, PDBj:8soq
PDBsum8soq
PubMed37831946
UniProtF9UST0|LARB_LACPL Pyridinium-3,5-biscarboxylic acid mononucleotide synthase (Gene Name=larB)

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