Structure of PDB 8rj4 Chain D

Receptor sequence
>8rj4D (length=214) Species: 562 (Escherichia coli) [Search protein sequence]
MRIILLGAPGAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAK
DIMDAGKLVTDELVIALVKERIAQEDCRNGFLLDGFPRTIPQADAMKEAG
INVDYVLEFDVPDELIVDRIVGRRVHAPSGRVYHVKFNPPKVEGKDDVTG
EELTTRKDDQEETVRKRLVEYHQMTAPLIGYYSKEAEAGNTKYAKVDGTK
PVAEVRADLEKILG
3D structure
PDB8rj4 Insights into Enzymatic Catalysis from Binding and Hydrolysis of Diadenosine Tetraphosphate by
ChainD
Resolution2.11 Å
3D
structure
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Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 ADP D P9 T31 G32 L35 R36 M53 K57 V59 V64 G85 R88 Q92 R123 R156 R167 P9 T31 G32 L35 R36 M53 K57 V59 V64 G85 R88 Q92 R123 R156 R167
BS02 ADP D G10 G12 K13 G14 T15 R119 R123 V132 Y133 H134 F137 V202 G10 G12 K13 G14 T15 R119 R123 V132 Y133 H134 F137 V202
Gene Ontology
Molecular Function
GO:0000287 magnesium ion binding
GO:0004017 adenylate kinase activity
GO:0004550 nucleoside diphosphate kinase activity
GO:0005515 protein binding
GO:0005524 ATP binding
GO:0016208 AMP binding
GO:0016301 kinase activity
GO:0050145 nucleoside monophosphate kinase activity
Biological Process
GO:0006172 ADP biosynthetic process
GO:0009123 nucleoside monophosphate metabolic process
GO:0009132 nucleoside diphosphate metabolic process
GO:0009165 nucleotide biosynthetic process
GO:0015951 purine ribonucleotide interconversion
GO:0016310 phosphorylation
GO:0044209 AMP salvage
GO:0046940 nucleoside monophosphate phosphorylation
Cellular Component
GO:0005737 cytoplasm
GO:0005829 cytosol

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Molecular Function
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Cellular Component
External links
PDB RCSB:8rj4, PDBe:8rj4, PDBj:8rj4
PDBsum8rj4
PubMed39121211
UniProtP69441|KAD_ECOLI Adenylate kinase (Gene Name=adk)

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