Structure of PDB 8rdu Chain D

Receptor sequence

>8rduD (length=257) Species: 34078 (Scytonema hofmannii) [Search protein sequence]

EWLQAEIARLKGKSIVPLQQVKTLHDWLDGKRKARKSCRVVGESRTGKTV
ACDAYRYRHKPQQEAGRPPTVPVVYIRPHQKCGPKDLFKKITEYLKYRVT
KGTVSDFRDRTIEVLKGCGVEMLIIDEADRLKPETFADVRDIAEDLGIAV
VLVGTDRLDAVIKRDEQVLERFRAHLRFGKLSGEDFKNTVEMWEQMVLKL
PVSSNLKSKEMLRILTSATEGYIGRLDEILREAAIRSLSRGLKKIDKAVL
QEVAKEY

3D structure

PDB

8rdu Conformational landscape of the type V-K CRISPR-associated transposon integration assembly.

Chain

Resolution

2.3 Å

3D
structure

[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	dna	D	T121 V122	T103 V104
BS02	ATP	D	K31 V34 S62 R63 T64 G65 K66 T67 V68 W211 G242 D245	K13 V16 S44 R45 T46 G47 K48 T49 V50 W193 G224 D227

External links

PDB	RCSB:8rdu, PDBe:8rdu, PDBj:8rdu
PDBsum	8rdu
PubMed	38834066
UniProt	A0A8J0PCL3

[Back to BioLiP]