Structure of PDB 8rdj Chain D

Receptor sequence
>8rdjD (length=611) Species: 3728 (Sinapis alba) [Search protein sequence]
MIDRYKHQQLRIGLVSPQQISAWATGEVTKPYTFHYKTNKPEKDGLFCER
IFGPIKSGICACGNYRVIKFCEQCGVEFVDSRIRRYQMGYIKLTCPVTHV
WYLKRLPSYIANLLDKPLKELEGLVYCDFSFARPITKKPTFLRLRGSFEY
EIQSWKYSIPLFFTTQGFEIFRNREISTGAGAIREQLADLDLRIIIENSL
VEWKQLGEEDRKIVRRKDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPP
ELRPDINELYRRVIYRNNTLTDLLVMCQEKLVQEAVDTLLDNGIRGQPMR
DGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCG
LPREIAIELFQTFVIRGLIRQHLASNIGVAKSQIREKKPIVWEILQEVMQ
GHPVLLNRAPTLHRLGIQSFQPILVEGRTICLHPLVCKGFNADFDGDQMA
VHVPLSLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSGT
RRGICANRYNPCEPFFCNSYDAIGAYRQKRINLDSPLWLRWQLDQRVIAS
KEVPIEVHYESFGNYHEIYAHYLIVRSVKKETLYIYIRTTVGHISFYREI
EEAIQGFSQAC
3D structure
PDB8rdj Structure of the plant plastid-encoded RNA polymerase.
ChainD
Resolution2.62 Å
3D
structure
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Enzymatic activity
Enzyme Commision number 2.7.7.6: DNA-directed RNA polymerase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 dna D Y45 K46 K135 Y36 K37 K119
BS02 dna D R121 D234 R235 K236 I237 H349 K363 R368 R375 R105 D210 R211 K212 I213 H303 K317 R322 R329
BS03 MG D D489 D491 D493 D443 D445 D447
Gene Ontology
Molecular Function
GO:0000287 magnesium ion binding
GO:0003677 DNA binding
GO:0003899 DNA-directed 5'-3' RNA polymerase activity
GO:0008270 zinc ion binding
GO:0016779 nucleotidyltransferase activity
GO:0046872 metal ion binding
Biological Process
GO:0006351 DNA-templated transcription
Cellular Component
GO:0000428 DNA-directed RNA polymerase complex
GO:0009507 chloroplast

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:8rdj, PDBe:8rdj, PDBj:8rdj
PDBsum8rdj
PubMed38428394
UniProtA0A6C0M5W0

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