Structure of PDB 8r56 Chain D

Receptor sequence
>8r56D (length=673) Species: 592022 (Priestia megaterium DSM 319) [Search protein sequence]
VTKGVNVEILQDGFEVALNGVVLLQHTIQKPMLFVGHGEETIEMYRGNFD
IKDYVTERTALRYANVEEMEGAYKIDLSNLKNGDTMLSLIVKEEENRLKV
EYQKNDANINRFWLRVAADKQEKVYGCGEQLSHFNMRGKNFPLWTSEPGV
GRNKQTYVTWQADVVDKAGGDYYNTNFPQPTYVSSKKYYCHVETTAYADF
DFRNEAFHELQVWEVPKYMLFETADTYLELVEKITGLFGRQPELPEWVYN
GVVLGIQGGTDVVEQKLEKVLAKGMKVSGVWCQDWQGKRITSFGKRLMWN
WKWNESEYPELDKKIAEWKENDIRFLGYINPYVAIEGDLYKEAEDKGYLA
LNTEGNTYLVDFGEFYCGVVDFTNEEATEWYKQVIKENMIDFGLDGWMAD
FGEYLPTDVVLKNRIDAKIMHNAWPTMWAKVNYEAVSEAGKLGEIVYFMR
AGYTGIQKYCTLLWGGDQSVDWSLDDGLASVIPAALSSGMIGCGLHHSDI
GGYTSLHGNKRSKELLMRWAEMGAFTPMMRTHEGNRPDDCFQFDGDEETL
EHLARMSNVYVTMAPYIKSLVEENARRGIPVQRPLFMHYEEDEKTYDIQY
QYLFGEDVLVAPVHQENQTEWEVYLPEDQWVHVWSGEAYTGGSVTVQAPL
GYPPVFYRKKSIWSELFSKLIHI
3D structure
PDB8r56 Detection of Sulfoquinovosidase Activity in Cell Lysates Using Activity-Based Probes.
ChainD
Resolution2.45 Å
3D
structure
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Enzymatic activity
Enzyme Commision number 3.2.1.-
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 Y2W D Q289 R302 L303 W305 Y334 M404 D406 F407 W470 D473 Y509 H538 Q283 R296 L297 W299 Y328 M398 D400 F401 W464 D467 Y503 H532
Gene Ontology
Molecular Function
GO:0003824 catalytic activity
GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds
GO:0016798 hydrolase activity, acting on glycosyl bonds
GO:0030246 carbohydrate binding
Biological Process
GO:0005975 carbohydrate metabolic process

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Molecular Function
View graph for
Biological Process
External links
PDB RCSB:8r56, PDBe:8r56, PDBj:8r56
PDBsum8r56
PubMed38647177
UniProtD5E1T0

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