Structure of PDB 8qek Chain D

Receptor sequence

>8qekD (length=441) Species: 307898 (Staphylococcus phage 812) [Search protein sequence]

SLYGQQQAYAEPFIEMMDTNPEFRDKRSYMKNEHNLHDVLKKFGNNPILN
AIILTRSNQVAMYCQPARYSEKGLGFEVRLRDLDAEPGRKEKEEMKRIED
FIVNTGKDKDVDRDSFQTFCKKIVRDTYIYDQVNFEKVFNKNNKTKLEKF
IAVDPSTIFYATDKKGKIIKGGKRFVQVVDKRVVASFTSRELAMGIRNPR
TELSSSGYGLSEVEIAMKEFIAYNNTESFNDRFFSHGGTTRGILQIRSDQ
QQSQHALENFKREWKSSLSGINGSWQIPVVMADDIKFVNMTPTANDMQFE
KWLNYLINIISALYGIDPAEIGFPNRGGATQQSQNKGLQPLLRFIEDLVN
RHIISEYGDKYTFQFVGGDTKSATDKLNILKLETQIFKTVNEAREEQGKK
PIEGGDIILDASFLQGTAQLQQDKQYNDGKQKERLQMMMSL

3D structure

PDB

8qek Genome anchoring, retention, and release by neck proteins of Herelleviridae phage 812

Chain

Resolution

3.6 Å

3D
structure

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Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	dna	D	R137 R145	R89 R97

External links

PDB	RCSB:8qek, PDBe:8qek, PDBj:8qek
PDBsum	8qek
PubMed
UniProt	A0A0U1WIV9

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