Structure of PDB 8q4d Chain D

Receptor sequence

>8q4dD (length=373) Species: 1422 (Geobacillus stearothermophilus) [Search protein sequence]

MITRGEFFMIKEMYERGMSISDIARELGIDRKTVRKYIHSPNPPSKSKRK
QRKSKLDPFKPYLQKRMLEDGVFNSEKLFFEIRQQGYTGGKTILKDYMKP
FRETAKKKYTVRYETLPGEQMQVDWKEVGEVVIEGKKVKLSLFVATLGYS
RMKYAVFTTSQDQEHLMECLIQSFKYFGGVPKKVLFDNMKTVTDGREQGV
VKWNQRFSEFASYYGFIPKVCRPYRAQTKGKVERAIQYIMDHFYVGTAFE
SIEELNFLLHRWLDQVANRKPNATTGISPQERWAEESLKPLPLKDYDTSY
LSYRKVHWDGSFSYKGEQWLLSAEYAGKEILVKERLNGDIRLYFRGEEIS
HVDQQKKVISFAEKIKKKQTEMA

3D structure

PDB

8q4d Molecular basis for transposase activation by a dedicated AAA+ ATPase.

Chain

Resolution

3.62 Å

3D
structure

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Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	dna	D	R35 R49 R52 K53 S54 K55 L56 T88 G89 G90 T92 I93 R304 K305 H307 S313 Y314 K315	R35 R49 R52 K53 S54 K55 L56 T88 G89 G90 T92 I93 R304 K305 H307 S313 Y314 K315
BS02	dna	D	D30 K50 R52 S75 E76 T92 K95 D96 K99 R102 R225 D309	D30 K50 R52 S75 E76 T92 K95 D96 K99 R102 R225 D309

Gene Ontology

	Molecular Function
GO:0003677	DNA binding

	Biological Process
GO:0006310	DNA recombination
GO:0032196	transposition

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Molecular Function

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Biological Process

External links

PDB	RCSB:8q4d, PDBe:8q4d, PDBj:8q4d
PDBsum	8q4d
PubMed	38926614
UniProt	Q45618\|TRA6_GEOSE Putative transposase for insertion sequence element IS5376

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