Structure of PDB 8p1s Chain D

Receptor sequence
>8p1sD (length=335) Species: 1684 (Bifidobacterium asteroides) [Search protein sequence]
SDTVEWFKQAKYGMMIHWGLYSLLGGEYQGKSSSNYAEWVQSKLQIPNKE
YERLTQAFNPIYFDADAIIDLAKRCGMQYLVVTTKHHDGFAMYRSLVDPY
NVYDATPFHRDVIGELSLACRKAGLRFGLYYSQDLDWHEPDGGGYLSNDI
ETAGTTWDNSWDFTGEKNYDRAFKHKIMPQIEEIMSNYGEISVAWFDVPM
TLSDEQSQTIYDTVKRLQPDCLINSRLGNGRYDYVSLGDNEIPEDSDASD
KVDYNSIEGFKPSKLGLYETAGTINDSWGFAYHDQNWKSPQTIHDYKAHL
NKYGINYLLNVGLDGLGRVPMAAEQALLGARALEA
3D structure
PDB8p1s Exploring sequence, structure and function of microbial fucosidases from glycoside hydrolase GH29 family
ChainD
Resolution1.9 Å
3D
structure
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Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 FUC D H38 Y57 E59 W60 H108 D218 R247 D260 W305 H17 Y36 E38 W39 H87 D197 R226 D239 W278
Gene Ontology
Molecular Function
GO:0004560 alpha-L-fucosidase activity
GO:0016787 hydrolase activity
Biological Process
GO:0006004 fucose metabolic process
GO:0016139 glycoside catabolic process
Cellular Component
GO:0005764 lysosome

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:8p1s, PDBe:8p1s, PDBj:8p1s
PDBsum8p1s
PubMed
UniProtA0A0F4KU40

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