Structure of PDB 8ozd Chain D

Receptor sequence

>8ozdD (length=473) Species: 429344 (Maribacter polysiphoniae) [Search protein sequence]

MKELIYIEEPKILFAHGQKCTDARDGLALFGPLNNLYGIKSGVIGTKQGL
KIFRDYLDHIQKPIYNSNSITRPMFPGFEAVFDCKWESTGITFKEVTNED
IGKFLYNSSTHKRTYDLVSLFIDKIISANKNEDENVDVWFVIVPDEIYKY
CRPNSVLPKEMVQTTYNYDAQFHDQFKARLLKHTIPTQIFRESTLAWRDF
KNAFGLPIRDFSKIEGHLAWTISTAAFYKAGGKPWKLSDVRNGVCYLGLV
YKKVEKSKNPRNACCAAQMFLDNGDGTVFKGEVGPWYNPKNGQYHLEPKE
AKALLSQSLQSYKEQIGEYPKEVFIHAKTRFNHQEWDAFLEVTPKETNLV
GVTISKTKPLKLYKTEGDYTILRGNAYVVNERSAFLWTVGYVPKIQTALS
MEVPNPLFIEINKGEADIKQVLKDILSLTKLNYNACIFADGEPVTLRFAD
KIGEILTASTDIKTPPLAFKYYI

3D structure

PDB

8ozd Activation mechanism of a short argonaute-TIR prokaryotic immune system.

Chain

Resolution

3.89 Å

3D
structure

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Enzymatic activity

Enzyme Commision number

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	D	Y148 R152 Q222 I223 F224 R225 T228 R243 T255 I256 K324 N325 G326 K390 S434 E436 N439 N468 A469 I471 D474 G475 R481 I507	Y148 R152 Q188 I189 F190 R191 T194 R209 T221 I222 K290 N291 G292 K356 S400 E402 N405 N434 A435 I437 D440 G441 R447 I473
BS02	dna	D	R72 P153 N154 Q205 F245 I248 H251 K286 K287 Y328 K362 R364 M435	R72 P153 N154 Q171 F211 I214 H217 K252 K253 Y294 K328 R330 M401

Gene Ontology

	Molecular Function
GO:0003676	nucleic acid binding

View graph for
Molecular Function

External links

PDB	RCSB:8ozd, PDBe:8ozd, PDBj:8ozd
PDBsum	8ozd
PubMed	37467330
UniProt	A0A316E3U6

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