Structure of PDB 8oor Chain D

Receptor sequence
>8oorD (length=441) Species: 209285 (Thermochaetoides thermophila) [Search protein sequence]
LIAAHSHIRGLGVDADTLEPRPSSQGLVGQEKARKAAAVVLEMIKQGKIA
GRAVLIAGPPSTGKTAIAMGMAQSLGQDVPFTTLAASEIFSLEMSKTEAL
TQAFRKSIGVRIKEESEIMEGEVVEIQIDRSVTGGAKQGKLTIKTTDMEA
IYDMGSKMIDAMTKERVMAGDIISIDKSSGKITKLGRSYARSRDYDAMGV
DTKFLQCPEGELQKRKEVVHTVSLHEIDVINSRTQGFLALFSGDTGEIRS
EIRDQINTKVAEWKEEGKAEIVPGVLFIDEVHMLDIECFSYINRALESDL
APIVIMASNRGVSRIRGTDYKSPHGLPLDFLDRVVIINTHPYTPDELRQI
LSIRAQEEEVDLTPDALALLTKIGQEAGLRYASNLITTSQLIAAKRRAKQ
VGVEDVQRSFKLFYDPARSVRFVQESEKRLIGNDGVVDFSY
3D structure
PDB8oor Hexasome-INO80 complex reveals structural basis of noncanonical nucleosome remodeling.
ChainD
Resolution2.87 Å
3D
structure
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Enzymatic activity
Enzyme Commision number 3.6.4.12: DNA helicase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 ADP D A23 H24 H26 V47 S80 G82 K83 T84 A85 Y361 L398 R399 A4 H5 H7 V28 S61 G63 K64 T65 A66 Y342 L379 R380
Gene Ontology
Molecular Function
GO:0003678 DNA helicase activity
GO:0004386 helicase activity
GO:0005515 protein binding
GO:0005524 ATP binding
GO:0008094 ATP-dependent activity, acting on DNA
GO:0016787 hydrolase activity
GO:0016887 ATP hydrolysis activity
Biological Process
GO:0000492 box C/D snoRNP assembly
GO:0006281 DNA repair
GO:0006325 chromatin organization
GO:0006338 chromatin remodeling
GO:0006357 regulation of transcription by RNA polymerase II
GO:0032508 DNA duplex unwinding
Cellular Component
GO:0000812 Swr1 complex
GO:0005634 nucleus
GO:0031011 Ino80 complex
GO:0035267 NuA4 histone acetyltransferase complex
GO:0097255 R2TP complex

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:8oor, PDBe:8oor, PDBj:8oor
PDBsum8oor
PubMed37384673
UniProtG0RYC2

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