Structure of PDB 8oie Chain D

Receptor sequence
>8oieD (length=272) Species: 272942 (Rhodobacter capsulatus SB 1003) [Search protein sequence]
TRKIAIYGKGGIGKSTTTQNTAAALAFFHEKNVFIHGCDPKADSTRLILG
GLPQQTVMDTLRIEGAERVTVDKVVKTGFKDIRCVESGGPEPGVGCAGRG
VITAIDLMEENEAYSEDLDFLFFDVLGDVVCGGFAMPIRDGKAEEVYIVA
SGEMMAIYAANNICKGLAKYARQSGVRLGGIICNSRNVDGEKEFLEEFTK
AIGTKMIHFVPRDNIVQKAEFNKQTVTEFQPEANQAQEYRELGRKIIENE
DFVIPKPLAMDELEAMVVKYGL
3D structure
PDB8oie Structural insights into the iron nitrogenase complex
ChainD
Resolution2.35 Å
3D
structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Enzymatic activity
Enzyme Commision number 1.18.6.1: nitrogenase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 ADP D G12 G14 K15 S16 T17 N185 R213 D214 V217 Q218 E221 G11 G13 K14 S15 T16 N184 R212 D213 V216 Q217 E220
BS02 AF3 D G11 G12 K15 D40 K42 G128 G10 G11 K14 D39 K41 G127
BS03 SF4 D C97 G99 C132 C96 G98 C131
BS04 ADP D K10 E154 M156 K9 E153 M155
Gene Ontology
Molecular Function
GO:0005524 ATP binding
GO:0016163 nitrogenase activity
GO:0016491 oxidoreductase activity
GO:0046872 metal ion binding
GO:0051539 4 iron, 4 sulfur cluster binding
Biological Process
GO:0009399 nitrogen fixation

View graph for
Molecular Function
View graph for
Biological Process
External links
PDB RCSB:8oie, PDBe:8oie, PDBj:8oie
PDBsum8oie
PubMed38062208
UniProtD5ANJ6

[Back to BioLiP]