Structure of PDB 8kda Chain D

Receptor sequence

>8kdaD (length=188) Species: 608538 (Hydrogenobacter thermophilus TK-6) [Search protein sequence]

DTFVLDTSVFTNPDVYHQFEEDQLGAIENFISLASHTNANFFMPTSVYYE
FTKMVSLGDLAPKFELVVRIRSPRKWGLMVPAEFLYEFIEEVRYRINKGL
RIAEEHTKEAGKLAEEEVGRVVNRLREKYREALRAGIIDSKEDVDVLLLS
YELDAILVSGDEGLRKWADRVGIKLIDPKNLRYIMENL

3D structure

PDB

8kda Cryo-EM structure of Hydrogenobacter thermophilus minimal protein-only RNase P (HARP) in complex with pre-tRNAs

Chain

Resolution

3.19 Å

3D
structure

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Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	D	G120 V123 R127 R131	G119 V122 R126 R130
BS02	rna	D	R102 K109	R101 K108

External links

PDB	RCSB:8kda, PDBe:8kda, PDBj:8kda
PDBsum	8kda
PubMed
UniProt	D3DIV8

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