Structure of PDB 8kd9 Chain D

Receptor sequence
>8kd9D (length=188) Species: 224324 (Aquifex aeolicus VF5) [Search protein sequence]
DVFVLDTSVFTNPEIYRTFEEDQRGAMETFIHLALNSRAEFYMPTSVYTE
MRKIMDVGELWAEFEMVVKIRSPRRFQLTVPADFLYEFIEELRYRINKGL
RIAEEHTREASGSEDVGKLIARLREKYREALRQGILDSKEDVDVLLLAYE
LDGVLVSADEGLRTWADKIGIKLIDPKNFKNILESLVR
3D structure
PDB8kd9 Cryo-EM structure of Aquifex aeolicus minimal protein-only RNase P (HARP) in complex with pre-tRNAs
ChainD
Resolution2.87 Å
3D
structure
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Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna D G118 A122 R125 R129 G117 A121 R124 R128
BS02 rna D Y95 N98 R102 R109 Y94 N97 R101 R108
External links
PDB RCSB:8kd9, PDBe:8kd9, PDBj:8kd9
PDBsum8kd9
PubMed
UniProtO67035|RFRNP_AQUAE RNA-free ribonuclease P (Gene Name=aq_880)

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