Structure of PDB 8kcb Chain D

Receptor sequence
>8kcbD (length=87) Species: 3702 (Arabidopsis thaliana) [Search protein sequence]
TYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAGESSKLARYNK
KPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFT
3D structure
PDB8kcb Mechanism of heterochromatin remodeling revealed by the DDM1 bound nucleosome structures.
ChainD
Resolution3.17 Å
3D
structure
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Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 dna D F62 S75 S76 K106 F7 S20 S21 K51
BS02 dna D I59 Y60 I4 Y5
Gene Ontology
Molecular Function
GO:0003677 DNA binding
GO:0005515 protein binding
Cellular Component
GO:0000786 nucleosome
GO:0005634 nucleus
GO:0005694 chromosome
GO:0005730 nucleolus
GO:0009536 plastid

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Molecular Function
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Cellular Component
External links
PDB RCSB:8kcb, PDBe:8kcb, PDBj:8kcb
PDBsum8kcb
PubMed38870940
UniProtQ9FFC0|H2B10_ARATH Histone H2B.10 (Gene Name=At5g22880)

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