Structure of PDB 8jq6 Chain D

Receptor sequence
>8jq6D (length=414) Species: 47715 (Lacticaseibacillus rhamnosus) [Search protein sequence]
MVKPEEVDKAYEVAKQRYAEIGVDTDAAMKELEKVPLSVHCWQGDDIHGF
LFPNYPGIARTPDELAGDMHEALSLIPGKHRVQLHAIYAVTDKKRDLDTL
EPEDFDYWIDWAKQEGVGLDFNGTFFSHPMVKDNMTVSSPDPKVRDFWIR
HGKISREISNYIGEKLGSQVVNNFWLPDGFKDNPIDKKTPRLRLLKALDE
IIKDPLPEKNTIESFEGKLFGTGIESYTTGSHEFYQNYAISRNKLWTIDA
GHFHPTEDVSDKFSAFFPFGKGLFMHVSRPVRWDSDHVVIMDDALIRITR
SLVRDGYLDRTHIGLDFFDATINRVAAWVVGARATQKSLLQAMLAPIDQL
KKDELNADFTTRLIETEELKSFPFGAVWDKFCQDHNTPVGFDWMNNIHQY
EKDVQFKRDAKLVH
3D structure
PDB8jq6 X-ray structure and characterization of a probiotic Lactobacillus rhamnosus Probio-M9 L-rhamnose isomerase.
ChainD
Resolution1.71 Å
3D
structure
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Enzymatic activity
Enzyme Commision number 5.3.1.14: L-rhamnose isomerase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 MN D E228 D261 H288 D328 E216 D249 H276 D316
BS02 MN D H264 D296 D298 H252 D284 D286
BS03 AFD D W42 H97 W187 E228 K230 H264 D328 W42 H85 W175 E216 K218 H252 D316
BS04 ALL D Y67 P68 F418 Y55 P56 F406
BS05 ALL D F403 D404 N407 F391 D392 N395
Gene Ontology
Molecular Function
GO:0008740 L-rhamnose isomerase activity
GO:0016853 isomerase activity
GO:0030145 manganese ion binding
GO:0046872 metal ion binding
Biological Process
GO:0019299 rhamnose metabolic process
GO:0019301 rhamnose catabolic process
GO:0019324 L-lyxose metabolic process
Cellular Component
GO:0005737 cytoplasm

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:8jq6, PDBe:8jq6, PDBj:8jq6
PDBsum8jq6
PubMed38430263
UniProtA0A171J5T1

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