Structure of PDB 8jq5 Chain D

Receptor sequence
>8jq5D (length=417) Species: 47715 (Lacticaseibacillus rhamnosus) [Search protein sequence]
MVKPEEVDKAYEVAKQRYAEIGVDTDAAMKELEKVPLSVHCWQGDDIHGF
LFPNQSGNYPGIARTPDELAGDMHEALSLIPGKHRVQLHAIYAVTDKKRD
LDTLEPEDFDYWIDWAKQEGVGLDFNGTFFSHPMVKDNMTVSSPDPKVRD
FWIRHGKISREISNYIGEKLGSQVVNNFWLPDGFKDNPIDKKTPRLRLLK
ALDEIIKDPLPEKNTIESFEGKLFGTGIESYTTGSHEFYQNYAISRNKLW
TIDAGHFHPTEDVSDKFSAFFPFGKGLFMHVSRPVRWDSDHVVIMDDALI
RITRSLVRDGYLDRTHIGLDFFDATINRVAAWVVGARATQKSLLQAMLAP
IDQLKKDELNADFTTRLIETEELKSFPFGAVWDKFCQDHNTPVGFDWMNN
IHQYEKDVQFKRDAKLV
3D structure
PDB8jq5 X-ray structure and characterization of a probiotic Lactobacillus rhamnosus Probio-M9 L-rhamnose isomerase.
ChainD
Resolution1.73 Å
3D
structure
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Enzymatic activity
Enzyme Commision number 5.3.1.14: L-rhamnose isomerase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 MN D E228 D261 H288 D328 E220 D253 H280 D320
BS02 MN D D261 H264 D296 D298 D253 H256 D288 D290
BS03 PSJ D H97 F138 W187 E228 K230 H264 D328 F330 H89 F130 W179 E220 K222 H256 D320 F322
BS04 PSV D W187 E228 K230 H264 D328 W179 E220 K222 H256 D320
Gene Ontology
Molecular Function
GO:0008740 L-rhamnose isomerase activity
GO:0016853 isomerase activity
GO:0030145 manganese ion binding
GO:0046872 metal ion binding
Biological Process
GO:0019299 rhamnose metabolic process
GO:0019301 rhamnose catabolic process
GO:0019324 L-lyxose metabolic process
Cellular Component
GO:0005737 cytoplasm

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:8jq5, PDBe:8jq5, PDBj:8jq5
PDBsum8jq5
PubMed38430263
UniProtA0A171J5T1

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