Structure of PDB 8jq4 Chain D

Receptor sequence
>8jq4D (length=416) Species: 47715 (Lacticaseibacillus rhamnosus) [Search protein sequence]
MVKPEEVDKAYEVAKQRYAEIGVDTDAAMKELEKVPLSVHCWQGDDIHGF
LFPSGNYPGIARTPDELAGDMHEALSLIPGKHRVQLHAIYAVTDKKRDLD
TLEPEDFDYWIDWAKQEGVGLDFNGTFFSHPMVKDNMTVSSPDPKVRDFW
IRHGKISREISNYIGEKLGSQVVNNFWLPDGFKDNPIDKKTPRLRLLKAL
DEIIKDPLPEKNTIESFEGKLFGTGIESYTTGSHEFYQNYAISRNKLWTI
DAGHFHPTEDVSDKFSAFFPFGKGLFMHVSRPVRWDSDHVVIMDDALIRI
TRSLVRDGYLDRTHIGLDFFDATINRVAAWVVGARATQKSLLQAMLAPID
QLKKDELNADFTTRLIETEELKSFPFGAVWDKFCQDHNTPVGFDWMNNIH
QYEKDVQFKRDAKLVH
3D structure
PDB8jq4 X-ray structure and characterization of a probiotic Lactobacillus rhamnosus Probio-M9 L-rhamnose isomerase.
ChainD
Resolution1.61 Å
3D
structure
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Enzymatic activity
Enzyme Commision number 5.3.1.14: L-rhamnose isomerase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 MN D E228 D261 H288 D328 E218 D251 H278 D318
BS02 MN D D261 H264 D296 D298 D251 H254 D286 D288
BS03 RM4 D H97 W187 E228 H264 D328 H87 W177 E218 H254 D318
BS04 RM4 D N255 K256 N245 K246
BS05 RAM D D26 D396 D26 D386
Gene Ontology
Molecular Function
GO:0008740 L-rhamnose isomerase activity
GO:0016853 isomerase activity
GO:0030145 manganese ion binding
GO:0046872 metal ion binding
Biological Process
GO:0019299 rhamnose metabolic process
GO:0019301 rhamnose catabolic process
GO:0019324 L-lyxose metabolic process
Cellular Component
GO:0005737 cytoplasm

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Biological Process
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Cellular Component
External links
PDB RCSB:8jq4, PDBe:8jq4, PDBj:8jq4
PDBsum8jq4
PubMed38430263
UniProtA0A171J5T1

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