Structure of PDB 8jq3 Chain D

Receptor sequence
>8jq3D (length=417) Species: 47715 (Lacticaseibacillus rhamnosus) [Search protein sequence]
MVKPEEVDKAYEVAKQRYAEIGVDTDAAMKELEKVPLSVHCWQGDDIHGF
LFPSGNYPGIARTPDELAGDMHEALSLIPGKHRVQLHAIYAVTDKKRDLD
TLEPEDFDYWIDWAKQEGVGLDFNGTFFSHPMVKDNMTVSSPDPKVRDFW
IRHGKISREISNYIGEKLGSQVVNNFWLPDGFKDNPIDKKTPRLRLLKAL
DEIIKDPLPEKNTIESFEGKLFGTGIESYTTGSHEFYQNYAISRNKLWTI
DAGHFHPTEDVSDKFSAFFPFGKGLFMHVSRPVRWDSDHVVIMDDALIRI
TRSLVRDGYLDRTHIGLDFFDATINRVAAWVVGARATQKSLLQAMLAPID
QLKKDELNADFTTRLIETEELKSFPFGAVWDKFCQDHNTPVGFDWMNNIH
QYEKDVQFKRDAKLVHG
3D structure
PDB8jq3 X-ray structure and characterization of a probiotic Lactobacillus rhamnosus Probio-M9 L-rhamnose isomerase.
ChainD
Resolution1.9 Å
3D
structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Enzymatic activity
Enzyme Commision number 5.3.1.14: L-rhamnose isomerase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 MN D E228 D261 H288 D328 E218 D251 H278 D318
BS02 MN D H264 D296 D298 H254 D286 D288
Gene Ontology
Molecular Function
GO:0008740 L-rhamnose isomerase activity
GO:0016853 isomerase activity
GO:0030145 manganese ion binding
GO:0046872 metal ion binding
Biological Process
GO:0019299 rhamnose metabolic process
GO:0019301 rhamnose catabolic process
GO:0019324 L-lyxose metabolic process
Cellular Component
GO:0005737 cytoplasm

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:8jq3, PDBe:8jq3, PDBj:8jq3
PDBsum8jq3
PubMed38430263
UniProtA0A171J5T1

[Back to BioLiP]