Structure of PDB 8jhe Chain D

Receptor sequence

>8jheD (length=504) Species: 32630 (synthetic construct)

ENEKIDIAIVGGGVSGVYSAWKLKTKYPNKKIVLFEGGDHIGGRLLSVIP
PGIPNMVAELGGMRILENTQKLIVKLIDDINEKLSQEDQIELYDFPVDQP
QNIAYLRGEHLRLFDFTNDPDKVPYKLSFLEKGNTSGTIIVNAIEQLVPG
ITNTDLTEEERLKMCQEATFEGAPLYTLGFWNLLYRVISGEAYQFSIDSG
GYNSTLVNWNAADAIPWYLSDFGIKPVYKGFKNGFQQVPISLANFFEEDG
GEIRLNAKLEGFEFKNNLFELTIDGEIIEATQLILAMPRRSLDLLTNTSP
KLQEIQSLIGSVTPRPLFKVFTTYSSPWWRNAGYTDSEGGYIPLQSGRTV
TDLPIRQTYYWPKNNGQPSVSGESMLLASYDDGSNIGFWDGLRPKALNQT
WHQYKAPRKMVEELSRQLKQIHDVDYTPAVKNASFRDWGEDPFGGGWNSW
NIGVKSWEVKEKIVHPIDNCSLYICGEAYSDGQGWVEGALQTADIMLKKF
IAVE

3D structure

• PDB: 8jhe Structural and functional analysis of hyper-thermostable ancestral L-amino acid oxidase that can convert Trp derivatives to D-forms by chemoenzymatic reaction.
• Chain: D
• Resolution: 2.201 Å

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	FAD	D	V13 G14 V17 S18 E39 G40 G46 R47 L48 G64 G65 M66 R67 F238 K261 L262 M290 S294 L320 W473 F478 G481 G511 E512 G519 W520 V521	V10 G11 V14 S15 E36 G37 G43 R44 L45 G61 G62 M63 R64 F235 K258 L259 M287 S291 L317 W438 F443 G446 G476 E477 G484 W485 V486

Gene Ontology

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UnboundLocalError

Python 3.6.8: /usr/bin/python3 Fri Nov 22 15:34:12 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()

   1443                 pubmed=display_regular_ligand(pdbid,asym_id,lig3,ligIdx,title)

   1444         else:

=> 1445             pubmed,uniprot=display_protein_receptor(pdbid,asym_id,title)

   1446     

   1447     uniprot_line=''

pubmed = '', uniprot = '', display_protein_receptor = <function display_protein_receptor>, pdbid = '8jhe', asym_id = 'D', title = 'Structural and functional analysis of hyper-ther...rivatives to D-forms by chemoenzymatic reaction. '

 /var/www/html/BioLiP/pdb.cgi in display_protein_receptor(pdbid='8jhe', asym_id='D', title='Structural and functional analysis of hyper-ther...rivatives to D-forms by chemoenzymatic reaction. ')

    839 

    840     if go:

=>  841         display_go(go,uniprot,pdbid,asym_id)

    842     return pubmed,uniprot

    843 

global display_go = <function display_go>, go = '0016491', uniprot = '', pdbid = '8jhe', asym_id = 'D'

 /var/www/html/BioLiP/pdb.cgi in display_go(go='0016491', uniprot='', pdbid='8jhe', asym_id='D')

    480         '''.replace("$namespace_link",namespace_link

    481           ).replace("$namespace",namespace

=>  482           ).replace("$uniprot",u

    483         ))

    484         for l,(term,name) in enumerate(go2aspect[Aspect]):

u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>