Structure of PDB 8grm Chain D

Receptor sequence
>8grmD (length=96) Species: 9606 (Homo sapiens) [Search protein sequence]
KRSRKESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASR
LAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSAK
3D structure
PDB8grm Synthetic E2-Ub-nucleosome conjugates for studying nucleosome ubiquitination.
ChainD
Resolution3.05 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 dna D K30 R31 R33 S55 S56 R86 S87 T88 K1 R2 R4 S26 S27 R57 S58 T59
BS02 dna D R31 R33 Y40 R2 R4 Y11
Gene Ontology
Molecular Function
GO:0003677 DNA binding
GO:0030527 structural constituent of chromatin
GO:0046982 protein heterodimerization activity
Cellular Component
GO:0000786 nucleosome

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Molecular Function
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Cellular Component
External links
PDB RCSB:8grm, PDBe:8grm, PDBj:8grm
PDBsum8grm
PubMed
UniProtO60814|H2B1K_HUMAN Histone H2B type 1-K (Gene Name=H2BC12)

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