Structure of PDB 8gj0 Chain D

Receptor sequence
>8gj0D (length=360) Species: 83333 (Escherichia coli K-12) [Search protein sequence]
YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKT
SIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVE
DTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKF
LLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRA
LQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSL
VEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAAL
GNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMT
LLRALAFHPR
3D structure
PDB8gj0 Structural characterisation of the complete cycle of sliding clamp loading in E. coli
ChainD
Resolution2.9 Å
3D
structure
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Enzymatic activity
Enzyme Commision number 2.7.7.7: DNA-directed DNA polymerase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 peptide D T323 L327 Q330 F359 T321 L325 Q328 F357
BS02 dna D K100 V101 K98 V99
BS03 ADP D A7 R11 P12 V19 G48 V49 G50 K51 T52 S53 L214 R215 A5 R9 P10 V17 G46 V47 G48 K49 T50 S51 L212 R213
BS04 ALF D K51 R215 K49 R213
BS05 ZN D C76 C79 C74 C77
Gene Ontology
Molecular Function
GO:0003677 DNA binding
GO:0003887 DNA-directed DNA polymerase activity
GO:0005515 protein binding
GO:0005524 ATP binding
GO:0016887 ATP hydrolysis activity
GO:0042802 identical protein binding
GO:0046872 metal ion binding
Biological Process
GO:0006260 DNA replication
GO:0006261 DNA-templated DNA replication
GO:0071897 DNA biosynthetic process
GO:0075523 viral translational frameshifting
Cellular Component
GO:0009360 DNA polymerase III complex
GO:0030894 replisome
GO:0043846 DNA polymerase III, clamp loader complex

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Biological Process
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Cellular Component
External links
PDB RCSB:8gj0, PDBe:8gj0, PDBj:8gj0
PDBsum8gj0
PubMed
UniProtP06710|DPO3X_ECOLI DNA polymerase III subunit tau (Gene Name=dnaX)

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