Structure of PDB 8fzj Chain D

Receptor sequence

>8fzjD (length=209) Species: 562 (Escherichia coli) [Search protein sequence]

MIGLVGKKVGMTRIFTEDGVSIPVTVIEVEANRVTQVKDLANDGYRAIQV
TTGAKKANRVTKPEAGHFAKAGVEAGRGLWEFRLAEGEEFTVGQSISVEL
FADVKKVDVTGTSKGKGFAGTVKRWNFRTQDATHGNSLSHRVPGSIGQNQ
TPGKVFKGKKMAGQMGNERVTVQSLDVVRVDAERNLLLVKGAVPGATGSD
LIVKPAVKA

3D structure

PDB

8fzj The ribosome termination complex remodels release factor RF3 and ejects GDP.

Chain

Resolution

3.0 Å

3D
structure

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Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)
BS01	rna	D	M11 R13 P23 D43 Y45 K56 R59 T61 K62 P63 G66 H67 K70 E81 R83 S113 K114 G115 G117 F118 G120 F127 R128 T129 Q130 T133 H134 G135 N136 S137 L138 S139 H140 R141 G144 S145 I146 G147 Q148 N149 X150 T151 P152 G153 K154 V155 K157 G158 K159 M161 A162 Q164 R169 T171 Q173 S174 A192 V193 G195 K208	M11 R13 P23 D43 Y45 K56 R59 T61 K62 P63 G66 H67 K70 E81 R83 S113 K114 G115 G117 F118 G120 F127 R128 T129 Q130 T133 H134 G135 N136 S137 L138 S139 H140 R141 G144 S145 I146 G147 Q148 N149 X150 T151 P152 G153 K154 V155 K157 G158 K159 M161 A162 Q164 R169 T171 Q173 S174 A192 V193 G195 K208
BS02	MG	D	K159 K160	K159 K160
BS03	MG	D	E81 F82	E81 F82

External links

PDB	RCSB:8fzj, PDBe:8fzj, PDBj:8fzj
PDBsum	8fzj
PubMed	39030416

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