Structure of PDB 8fzf Chain D

Receptor sequence

>8fzfD (length=209) Species: 562 (Escherichia coli) [Search protein sequence]

MIGLVGKKVGMTRIFTEDGVSIPVTVIEVEANRVTQVKDLANDGYRAIQV
TTGAKKANRVTKPEAGHFAKAGVEAGRGLWEFRLAEGEEFTVGQSISVEL
FADVKKVDVTGTSKGKGFAGTVKRWNFRTQDATHGNSLSHRVPGSIGQNQ
TPGKVFKGKKMAGQMGNERVTVQSLDVVRVDAERNLLLVKGAVPGATGSD
LIVKPAVKA

3D structure

PDB

8fzf The ribosome termination complex remodels release factor RF3 and ejects GDP

Chain

Resolution

3.2 Å

3D
structure

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Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	D	M11 R13 P23 D43 Y45 Q49 K56 R59 T61 K62 P63 H67 L79 E81 R83 S113 K114 G115 G117 F118 G120 R128 T133 H134 G135 N136 S137 L138 S139 H140 R141 G144 S145 I146 Q148 N149 X150 T151 P152 G153 V155 K159 M161 A162 Q164 R169 V170 Q173 S174 A192 V193 K208	M11 R13 P23 D43 Y45 Q49 K56 R59 T61 K62 P63 H67 L79 E81 R83 S113 K114 G115 G117 F118 G120 R128 T133 H134 G135 N136 S137 L138 S139 H140 R141 G144 S145 I146 Q148 N149 X150 T151 P152 G153 V155 K159 M161 A162 Q164 R169 V170 Q173 S174 A192 V193 K208

External links

PDB	RCSB:8fzf, PDBe:8fzf, PDBj:8fzf
PDBsum	8fzf
PubMed	39030416

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