Structure of PDB 8fzd Chain D

Receptor sequence

>8fzdD (length=209) Species: 562 (Escherichia coli) [Search protein sequence]

MIGLVGKKVGMTRIFTEDGVSIPVTVIEVEANRVTQVKDLANDGYRAIQV
TTGAKKANRVTKPEAGHFAKAGVEAGRGLWEFRLAEGEEFTVGQSISVEL
FADVKKVDVTGTSKGKGFAGTVKRWNFRTQDATHGNSLSHRVPGSIGQNQ
TPGKVFKGKKMAGQMGNERVTVQSLDVVRVDAERNLLLVKGAVPGATGSD
LIVKPAVKA

3D structure

PDB

8fzd The ribosome termination complex remodels release factor RF3 and ejects GDP.

Chain

Resolution

3.1 Å

3D
structure

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Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	D	M11 R13 P23 Y45 K56 R59 T61 K62 P63 G66 H67 K70 E81 R83 S113 K114 G115 K116 G117 F118 G120 R124 F127 R128 T129 Q130 D131 T133 H134 G135 N136 S137 L138 S139 H140 R141 G144 S145 I146 G147 Q148 N149 X150 T151 P152 G153 V155 K157 K159 M161 A162 Q164 R169 T171 Q173 S174 V193 T197 K208	M11 R13 P23 Y45 K56 R59 T61 K62 P63 G66 H67 K70 E81 R83 S113 K114 G115 K116 G117 F118 G120 R124 F127 R128 T129 Q130 D131 T133 H134 G135 N136 S137 L138 S139 H140 R141 G144 S145 I146 G147 Q148 N149 X150 T151 P152 G153 V155 K157 K159 M161 A162 Q164 R169 T171 Q173 S174 V193 T197 K208

External links

PDB	RCSB:8fzd, PDBe:8fzd, PDBj:8fzd
PDBsum	8fzd
PubMed	39030416

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