Structure of PDB 8eup Chain D

Receptor sequence
>8eupD (length=400) Species: 4896 (Schizosaccharomyces pombe) [Search protein sequence]
LSENIQKAIKEMGFETMTEIQKRSIPPLLAGRDVLAKTGSGKTLAFLIPT
IEMLYALKFKPRNGTGVIIISPTRELALQIFGVAKELLKYHHQTFGIVIG
GANRRAEADKLVKGVNLLVATPGRLLDHLQNTKGFVFRNLRSLVIDEADR
ILEIGFEDEMRQIMKILPSENRQTLLFKVEDLARISEQGYVVVDSDKRFL
LLFSFLKRNLKKKVIVFMSSCASVKYMAELLNYIDLPVLDLHGKQKQQRR
TNTFFEFCNAEKGILLCTNVAARGLDIPAVDWIVQYDPPDDPRDYIHRVG
GKSLMFLAPSELGFLRYLKTAKVSLNEFEFPANKVANVQSQLEKLVSKNY
YLQQSAKDGYRSYLQAYASYSLKSIFDINKLDLAKVAKSFGFAHPPNVNI
3D structure
PDB8eup Chromatin localization of nucleophosmin organizes ribosome biogenesis.
ChainD
Resolution3.1 Å
3D
structure
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Enzymatic activity
Enzyme Commision number 3.6.4.13: RNA helicase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna D N200 R202 K207 Y484 R495 N103 R105 K110 Y350 R361
Gene Ontology
Molecular Function
GO:0003676 nucleic acid binding
GO:0003723 RNA binding
GO:0003724 RNA helicase activity
GO:0004386 helicase activity
GO:0005524 ATP binding
GO:0016787 hydrolase activity
GO:0016887 ATP hydrolysis activity
Biological Process
GO:0000463 maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0006364 rRNA processing
GO:0042254 ribosome biogenesis
GO:1902626 assembly of large subunit precursor of preribosome
Cellular Component
GO:0005634 nucleus
GO:0005730 nucleolus

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:8eup, PDBe:8eup, PDBj:8eup
PDBsum8eup
PubMed36423630
UniProtQ09916|HAS1_SCHPO ATP-dependent RNA helicase has1 (Gene Name=has1)

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