Structure of PDB 8ekm Chain D

Receptor sequence
>8ekmD (length=370) Species: 645463 (Clostridioides difficile R20291) [Search protein sequence]
EDLDTDNDNIPDSYERNGYTIKDLIAVKWEDSFAEQGYKKYVSNYLESNT
AGDPYTDYEKASGSFDKAIKTEARDPLVAAYPIVGVGMEKLIISTNEHAS
TDQGKTVSRATTNSKNSTAVQDSNGESWNTGLSINKGESAYINANVRYYN
TGTAPMYKVTPTTNLVLDGDTLSTIKAQENQIGNNLSPGDTYPKKGLSPL
ALNTMDQFSSRLIPINYDQLKKLDAGKQIKLETTQVSGNFGTKNSSGQIV
TEGNSWSDYISQIDSISASIILDTENESYERRVTAKNLQDPEDKTPELTI
GEAIEKAFGATKKDGLLYFNDIPIDESCVELIFDDNTANKIKDSLKTLSD
KKIYNVKLERGMNILIKTPT
3D structure
PDB8ekm Calcium-mediated Pore Formation of Clostridioides difficile Binary Toxin
ChainD
Resolution3.56 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 CA D D220 D222 D224 I226 E231 D4 D6 D8 I10 E15
BS02 CA D D222 D224 E231 N260 D273 D6 D8 E15 N44 D57
Gene Ontology
Biological Process
GO:0051260 protein homooligomerization
Cellular Component
GO:0005576 extracellular region

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Biological Process
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Cellular Component
External links
PDB RCSB:8ekm, PDBe:8ekm, PDBj:8ekm
PDBsum8ekm
PubMed
UniProtA0A9R0BM17

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